Successful isolation of plasmid DNA is possible from most E.coli
strains, though the strain which is used can have a significant
influence on the quality of the purified DNA. Host strains such as
DH10b, DH5 alpha, XL10 Gold and TOP10 normally result in high
quality DNA in combination with many commercially available plasmid
DNA isolation kits and are therefore ideal for the propagation of
plasmids to be sequenced. Lower quality DNA is derived from strains
producing large amounts of carbohydrates, which are released during
lysis and inhibit enzyme activity. Examples are HB101 and its
derivatives such as TG1 and the JM100 series. Also strains with
medium or high levels of endonuclease activity like HB101, JM101 or
BL21 generate DNA of lower quality, hence a proteinase K treatment
should be considered.